Viral pneumonia

DOID EFO MESH SNOMED Endpoint Browser PheWeb

J10_VIRALPNEUMO

viral pneumonia: Inflammation of the lung parenchyma that is caused by a viral infection.

Endpoint definition

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FinnGen phenotype data

429209 individuals

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Apply sex-specific rule None

429209

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Check conditions None

429209

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Check pre-conditions, main-only, mode, registry filters

Hospital Discharge: ICD-10 J12|J171|J100|J110|B012|B068|B250

Hospital discharge: ICD-9 480|4870A

Hospital discharge: ICD-8 48099|47101|47109

Cause of death: ICD-10 J12|J171|J100|J110|B012|B068|B250

Cause of death: ICD-9 480|4870A

Cause of death: ICD-8 48099|47101|47109

2 out of 7 registries used, show all original rules.

3985

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Check minimum number of events None

3985

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Include endpoints None

3985

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Remove individuals based on genotype QC

3777

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J10_VIRALPNEUMO

Control definitions

Control exclude J10_INFLUPNEU

Extra metadata

Level in the ICD hierarchy 3

First used in FinnGen datafreeze DF2

NAME	J10_VIRALPNEUMO
CONTROL_EXCLUDE	J10_INFLUPNEU
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	J12\|J171\|J100\|J110\|B012\|B068\|B250
HD_ICD_9	480\|4870A
HD_ICD_8	48099\|47101\|47109
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	J12\|J171\|J100\|J110\|B012\|B068\|B250
COD_ICD_9	480\|4870A
COD_ICD_8	48099\|47101\|47109
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

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Or the full data table

Similar endpoints

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List of similar endpoints to Viral pneumonia based on the number of shared cases.

Broader endpoints:

Narrower endpoints:

None

Show all endpoint correlations

Summary Statistics

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Key figures

	All	Female	Male
Number of individuals	3777	1777	2000
Unadjusted prevalence (%)	0.92	0.77	1.10
Mean age at first event (years)	50.30	47.83	52.48

Mortality

Follow-up	Absolute risk	HR [95% CI]	p	N
1998–2019	0.18	9.57 [7.38, 12.41]	4.1e-65	678
15 years	0.02	2.08 [1.59, 2.72]	7.9e-8	121
5 years	0.01	8.29 [6.53, 10.52]	1.0e-67	242
1 year	-	-	-	-

Age distribution of first events

Year distribution of first events

Cumulative Incidence

Correlations

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Index endpoint: J10_VIRALPNEUMO – Viral pneumonia
GWS hits: 1

Survival analyses between endpoints

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Plot

before Viral pneumonia
after Viral pneumonia

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Table

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Drugs most likely to be purchased after Viral pneumonia

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Endpoint not on priority list, no data to show.