Pneumonia due to Streptococcus pneumoniae

DOID EFO MESH SNOMED Endpoint Browser PheWeb

J10_PNEUMOPNEUMO

streptococcal pneumonia: A febrile disease caused by streptococcus pneumoniae.

Endpoint definition

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FinnGen phenotype data

429209 individuals

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Apply sex-specific rule None

429209

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Check conditions None

429209

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Check pre-conditions, main-only, mode, registry filters

Hospital Discharge: ICD-10 J13

Hospital discharge: ICD-9 481

Hospital discharge: ICD-8 48199

Cause of death: ICD-10 J13

Cause of death: ICD-9 481

Cause of death: ICD-8 48199

2 out of 7 registries used, show all original rules.

1396

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Check minimum number of events None

1396

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Include endpoints None

1396

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Remove individuals based on genotype QC

1339

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J10_PNEUMOPNEUMO

Control definitions

Control exclude J10_INFLUPNEU

Extra metadata

Level in the ICD hierarchy 4

First used in FinnGen datafreeze DF2

Parent code in ICD-10 J09-J18

Name in latin Pneumonia a Streptococco pneumoniae

NAME	J10_PNEUMOPNEUMO
CONTROL_EXCLUDE	J10_INFLUPNEU
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	J13
HD_ICD_9	481
HD_ICD_8	48199
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	J13
COD_ICD_9	481
COD_ICD_8	48199
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

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Similar endpoints

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List of similar endpoints to Pneumonia due to Streptococcus pneumoniae based on the number of shared cases.

Broader endpoints:

Narrower endpoints:

None

Show all endpoint correlations

Summary Statistics

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Key figures

	All	Female	Male
Number of individuals	1339	543	796
Unadjusted prevalence (%)	0.33	0.24	0.44
Mean age at first event (years)	49.19	46.52	51.01

Mortality

Follow-up	Absolute risk	HR [95% CI]	p	N
1998–2019	0.14	7.00 [4.80, 10.21]	4.3e-24	329
15 years	0.02	3.07 [2.21, 4.25]	1.5e-11	109
5 years	0.01	6.45 [4.83, 8.61]	9.7e-37	104
1 year	-	-	-	-

Age distribution of first events

Year distribution of first events

Cumulative Incidence

Correlations

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Index endpoint: J10_PNEUMOPNEUMO – Pneumonia due to Streptococcus pneumoniae
GWS hits:

Survival analyses between endpoints

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Plot

before Pneumonia due to Streptococcus pneumoniae
after Pneumonia due to Streptococcus pneumoniae

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Table

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Drugs most likely to be purchased after Pneumonia due to Streptococcus pneumoniae

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Endpoint not on priority list, no data to show.