Viral pneumonia (unknown virus, not influenza)

DOID EFO MESH SNOMED Endpoint Browser PheWeb

VIRALPNEUMONAS

viral pneumonia: Inflammation of the lung parenchyma that is caused by a viral infection.

Endpoint definition

↥

FinnGen phenotype data

429209 individuals

diagram downward connector

Apply sex-specific rule None

429209

diagram downward connector

Check conditions None

429209

diagram downward connector

Check pre-conditions, main-only, mode, registry filters

Hospital Discharge: ICD-10 J12.8, J12.9

Hospital discharge: ICD-9 480

Hospital discharge: ICD-8 480

Hospital discharge: excluded ICD-9 480[0-2]

Cause of death: ICD-10 J12.8, J12.9

Cause of death: ICD-9 480

Cause of death: ICD-8 480

Cause of death: excluded ICD-9 480[0-2]

2 out of 7 registries used, show all original rules.

1807

diagram downward connector

Check minimum number of events None

1807

diagram downward connector

Include endpoints None

1807

diagram downward connector

diagram downward connector

Remove individuals based on genotype QC

1683

diagram downward connector

VIRALPNEUMONAS

Control definitions

Control exclude ASTHMA_PNEUMONIA

Extra metadata

First used in FinnGen datafreeze DF2

NAME	VIRALPNEUMONAS
CONTROL_EXCLUDE	ASTHMA_PNEUMONIA
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	J128\|J129
HD_ICD_9	480
HD_ICD_8	480
HD_ICD_10_EXCL
HD_ICD_9_EXCL	480[0-2]
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	J128\|J129
COD_ICD_9	480
COD_ICD_8	480
COD_ICD_10_EXCL
COD_ICD_9_EXCL	480[0-2]
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Show upset plot detailing case counts by codes

Or the full data table

Similar endpoints

↥

List of similar endpoints to Viral pneumonia (unknown virus, not influenza) based on the number of shared cases.

Broader endpoints:

Narrower endpoints:

None

Show all endpoint correlations

Summary Statistics

↥

Key figures

	All	Female	Male
Number of individuals	1683	792	891
Unadjusted prevalence (%)	0.41	0.34	0.49
Mean age at first event (years)	40.23	37.91	42.29

Mortality

Follow-up	Absolute risk	HR [95% CI]	p	N
1998–2019	0.16	8.48 [6.06, 11.88]	1.4e-35	185
15 years	0.02	2.50 [1.67, 3.72]	7.2e-6	47
5 years	0.01	4.54 [3.09, 6.67]	1.4e-14	41
1 year	-	-	-	-

Age distribution of first events

Year distribution of first events

Cumulative Incidence

Correlations

↥

Index endpoint: VIRALPNEUMONAS – Viral pneumonia (unknown virus, not influenza)
GWS hits:

Survival analyses between endpoints

↥

Plot

before Viral pneumonia (unknown virus, not influenza)
after Viral pneumonia (unknown virus, not influenza)

Loading survival analyses plot

Table

Loading survival analyses table

Drugs most likely to be purchased after Viral pneumonia (unknown virus, not influenza)

↥

Endpoint not on priority list, no data to show.