Congenital malformations of genital organs

MESH Endpoint Browser PheWeb

Q17_CONGEN_MALFO_GENITAL_ORGANS

No definition available.

Endpoint definition

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FinnGen phenotype data

429209 individuals

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Apply sex-specific rule None

429209

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Check conditions None

429209

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Check pre-conditions, main-only, mode, registry filters

Hospital Discharge: ICD-10 Q50-Q56

Cause of death: ICD-10 Q50-Q56

2 out of 7 registries used, show all original rules.

3338

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Check minimum number of events None

3338

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Include endpoints

Q17_CONGEN_MALFO_OVARIES_FALLOP_TUBES_BROAD_LIGAM

Q17_CONGEN_MALFO_UTERUS_CERVIX

Q17_OTHER_CONGEN_MALFO_FEMALE_GENITALIA

Q17_UNDES_TESTICLE

Q17_HYPOSPADIAS

Q17_OTHER_CONGEN_MALFO_MALE_GENITAL_ORGANS

Q17_INDET_SEX_PSEUDOHE

3338

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Remove individuals based on genotype QC

3166

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Q17_CONGEN_MALFO_GENITAL_ORGANS

Control definitions

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 2

First used in FinnGen datafreeze DF4

Parent code in ICD-10 Q

Name in latin Malformationes congenitae organorum genitalium

NAME	Q17_CONGEN_MALFO_GENITAL_ORGANS
CONTROL_EXCLUDE
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE	Q17_CONGEN_MALFO_OVARIES_FALLOP_TUBES_BROAD_LIGAM\|Q17_CONGEN_MALFO_UTERUS_CERVIX\|Q17_OTHER_CONGEN_MALFO_FEMALE_GENITALIA\|Q17_UNDES_TESTICLE\|Q17_HYPOSPADIAS\|Q17_OTHER_CONGEN_MALFO_MALE_GENITAL_ORGANS\|Q17_INDET_SEX_PSEUDOHE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	Q5
HD_ICD_9
HD_ICD_8
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	Q5
COD_ICD_9
COD_ICD_8
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

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Similar endpoints

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List of similar endpoints to Congenital malformations of genital organs based on the number of shared cases.

Broader endpoints:

Narrower endpoints:

Show all endpoint correlations

Summary Statistics

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Key figures

	All	Female	Male
Number of individuals	3166	2627	539
Unadjusted prevalence (%)	0.77	1.14	0.30
Mean age at first event (years)	34.04	36.91	20.05

Mortality

Follow-up	Absolute risk	HR [95% CI]	p	N
1998–2019	0.03	1.47 [0.56, 3.86]	4.4e-1	69
15 years	0.01	0.93 [0.42, 2.02]	8.5e-1	23
5 years	0.00	2.57 [1.26, 5.24]	9.8e-3	16
1 year	-	-	-	-

Age distribution of first events

Year distribution of first events

Cumulative Incidence

Correlations

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Index endpoint: Q17_CONGEN_MALFO_GENITAL_ORGANS – Congenital malformations of genital organs
GWS hits:

Survival analyses between endpoints

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Plot

before Congenital malformations of genital organs
after Congenital malformations of genital organs

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Table

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Drugs most likely to be purchased after Congenital malformations of genital organs

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Endpoint not on priority list, no data to show.