Abscess of lung

DOID EFO MESH SNOMED Endpoint Browser PheWeb

J10_ABSCLUNGPNEUMO

Lung Abscess: Solitary or multiple collections of PUS within the lung parenchyma as a result of infection by bacteria, protozoa, or other agents.

Endpoint definition

↥

FinnGen phenotype data

429209 individuals

diagram downward connector

Apply sex-specific rule None

429209

diagram downward connector

Check conditions None

429209

diagram downward connector

Check pre-conditions, main-only, mode, registry filters

Hospital Discharge: ICD-10 J85.1, J85.2

Hospital discharge: ICD-9 5130

Hospital discharge: ICD-8 51399

Cause of death: ICD-10 J85.1, J85.2

Cause of death: ICD-9 5130

Cause of death: ICD-8 51399

2 out of 7 registries used, show all original rules.

439

diagram downward connector

Check minimum number of events None

439

diagram downward connector

Include endpoints None

439

diagram downward connector

diagram downward connector

Remove individuals based on genotype QC

416

diagram downward connector

J10_ABSCLUNGPNEUMO

Control definitions

Control exclude J10_NECROTIC

Extra metadata

Level in the ICD hierarchy 3

First used in FinnGen datafreeze DF2

NAME	J10_ABSCLUNGPNEUMO
CONTROL_EXCLUDE	J10_NECROTIC
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	J85[1-2]
HD_ICD_9	5130
HD_ICD_8	51399
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	J85[1-2]
COD_ICD_9	5130
COD_ICD_8	51399
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Show upset plot detailing case counts by codes

Or the full data table

Similar endpoints

↥

List of similar endpoints to Abscess of lung based on the number of shared cases.

Broader endpoints:

Narrower endpoints:

None

Show all endpoint correlations

Summary Statistics

↥

Key figures

	All	Female	Male
Number of individuals	416	113	303
Unadjusted prevalence (%)	0.10	0.05	0.17
Mean age at first event (years)	57.78	52.34	59.81

Mortality

Follow-up	Absolute risk	HR [95% CI]	p	N
1998–2019	-	-	-	-
15 years	-	-	-	-
5 years	-	-	-	-
1 year	-	-	-	-

Age distribution of first events

Year distribution of first events

Cumulative Incidence

Correlations

↥

Index endpoint: J10_ABSCLUNGPNEUMO – Abscess of lung
GWS hits: 1

Survival analyses between endpoints

↥

Plot

before Abscess of lung
after Abscess of lung

Loading survival analyses plot

Table

Loading survival analyses table

Drugs most likely to be purchased after Abscess of lung

↥

Endpoint not on priority list, no data to show.