Benign neoplasm: Tonsil

DOID EFO MESH SNOMED Endpoint Browser PheWeb

CD2_BENIGN_TONSIL

tonsil cancer: Tumors or cancer of the PALATINE TONSIL.

Endpoint definition

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FinnGen phenotype data

429209 individuals

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Apply sex-specific rule None

429209

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Check conditions None

429209

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Check pre-conditions, main-only, mode, registry filters

Hospital Discharge: ICD-10 D10.4&

Hospital discharge: ICD-9 2105

Hospital discharge: ICD-8 2105

Cause of death: ICD-10 D10.4&

Cause of death: ICD-9 2105

Cause of death: ICD-8 2105

2 out of 7 registries used, show all original rules.

332

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Check minimum number of events None

332

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Include endpoints None

332

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Remove individuals based on genotype QC

317

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CD2_BENIGN_TONSIL

Control definitions

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 3

First used in FinnGen datafreeze DF2

Parent code in ICD-10 D10

Name in latin Neoplasma benignum tonsillae palatinae

NAME	CD2_BENIGN_TONSIL
CONTROL_EXCLUDE
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	D104
HD_ICD_9	2105
HD_ICD_8	2105
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	D104
COD_ICD_9	2105
COD_ICD_8	2105
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

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Similar endpoints

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List of similar endpoints to Benign neoplasm: Tonsil based on the number of shared cases.

Broader endpoints:

Narrower endpoints:

Benign neoplasm: Tonsil (controls excluding all cancers)

Show all endpoint correlations

Summary Statistics

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Key figures

	All	Female	Male
Number of individuals	317	187	130
Unadjusted prevalence (%)	0.08	0.08	0.07
Mean age at first event (years)	56.95	54.31	60.75

Mortality

Follow-up	Absolute risk	HR [95% CI]	p	N
1998–2019	0.08	4.12 [1.91, 8.88]	3.0e-4	47
15 years	0.02	2.53 [1.27, 5.03]	8.2e-3	21
5 years	0.01	3.83 [2.00, 7.36]	5.4e-5	13
1 year	-	-	-	-

Age distribution of first events

Year distribution of first events

Cumulative Incidence

Correlations

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Index endpoint: CD2_BENIGN_TONSIL – Benign neoplasm: Tonsil
GWS hits:

Survival analyses between endpoints

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Plot

before Benign neoplasm: Tonsil
after Benign neoplasm: Tonsil

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Table

Loading survival analyses table

Drugs most likely to be purchased after Benign neoplasm: Tonsil

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Endpoint not on priority list, no data to show.